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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TRRAP
wikigenes
PDBj
CellType: HeLa
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX023658
GSM566164: TRRAP-GFP HeLa rep2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TRRAP
Cell type
Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
Human cervical carcinoma cell line
cell line
HeLa Kyoto cell line
sample type
Antibody GFP Abcam (ab290-050); HeLa cells stably transfected with TRRAP-GFP BAC
antibody
anti-GFP
antibody manufacturer
Abcam
transfection
TRRAP-GFP BAC
Sequenced DNA Library
library_name
GSM566164: TRRAP-GFP_HeLa rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
34921058
Reads aligned (%)
98.8
Duplicates removed (%)
10.9
Number of peaks
1220 (qval < 1E-05)
hg19
Number of total reads
34921058
Reads aligned (%)
98.1
Duplicates removed (%)
12.0
Number of peaks
1147 (qval < 1E-05)
Base call quality data from
DBCLS SRA